// Bioformats Importer Action Tool 
macro "Bioformats Importer Action Tool - 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" {
	run("Bio-Formats Importer");
	// Rename images after importing to file parent name - PMT1, SRS, PMT3
	runMacro("SicLab_imgrename_ext.ijm");
}

// B&C tool
macro "Adjust Brightness and Contrast Action Tool - 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" {
    run("Brightness/Contrast...");
}

// Plot Z projection
macro "Plot Z Axis Profile Action Tool - C000D0dD0eD13D14D15D16D17D18D19D1aD1bD1cD1dD20D21D22D23D24D25D26D27D28D29D2aD2bD2cD2fD33D34D35D36D37D38D39D3aD3bD3eD3fD47D48D49D4aD4dD4eD4fD5cD5dD5eD5fD6bD6cD6dD6eD6fD7dD7eD7fD8dD8eD8fD9dD9eD9fDaeDafDbeDbfDcfDdfDefDffC000C111C222C333C444D1fD2eD3dD4cD5bD6aD79D87D88D96Da5Db4Dc3Dd2De1Df0C444C555C666C777C888C999CaaaCbbbCcccD0fD1eD2dD3cD4bD5aD69D78D86D95Da4Db3Dc2Dd1De0CcccCdddCeeeCfff"{
	run("Plot Z-axis Profile")
}

// Z project
macro "Maximum Intensity Projection Action Tool (+shift = Avg; +space = StDev; +alt = ZProj Menu) - C902T3f18Z" {
	n = nSlices;
    if (isKeyDown("shift")) {
    run("Z Project...", "projection=[Average Intensity]")};
    if (isKeyDown("space")) {
    run("Z Project...", "projection=[Standard Deviation]")};
    if (isKeyDown("alt")) {
    run("Z Project...")};
    else {
    	run("Z Project...", "projection=[Max Intensity]")};
    	
}

// ROI Manager
macro "ROI Manager Action Tool - C902D00D01D02D10D11D12D20D21D22D30D31D32D40D41D42D50D51D52D60D61D62D70D71D72D80D81D82D90D91D92Da0Da1Da2Db0Db1Db2Dc0Dc1Dc2CfffD03D04D05D06D07D08D09D0aD0bD0cD0dD0eD0fD13D14D15D16D17D18D19D1aD1bD1cD1dD1eD1fD23D24D25D26D27D28D29D2aD2bD2cD2dD2eD2fD33D34D35D36D37D38D39D3aD3bD3cD3dD3eD3fD43D44D45D46D47D48D49D4aD4bD4cD4dD4eD4fD53D54D55D56D57D58D59D5aD5bD5cD5dD5eD5fD63D64D65D66D67D68D69D6aD6bD6cD6dD6eD6fD73D74D75D76D77D78D79D7aD7bD7cD7dD7eD7fD83D84D85D86D87D88D89D8aD8bD8cD8dD8eD8fD93D96D99D9cD9fDa3Da6Da9DacDafDb3Db6Db9DbcDbfDc3Dc6Dc9DccDcfDd3Dd6Dd9DdcDdfDe3De6De9DecDefDf3Df6Df9DfcDffCbbbD94D95D97D98D9aD9bD9dD9eDa4Da5Da7Da8DaaDabDadDaeDb4Db5Db7Db8DbaDbbDbdDbeDc4Dc5Dc7Dc8DcaDcbDcdDceDd4Dd5Dd7Dd8DdaDdbDddDdeDe4De5De7De8DeaDebDedDeeDf4Df5Df7Df8DfaDfbDfdDfeCf00Dd0Dd1Dd2De0De1De2Df0Df1Df2"{
run("ROI Manager...");
}

macro "Export ROIs Action Tool - C902D00D01D02D10D11D12D20D21D22D30D31D32D40D41D42D50D51D52D60D61D62D70D71D72D80D81D82D90D91D92Da0Da1Da2Db0Db1Db2Dc0Dc1Dc2CfffD03D04D05D06D07D08D09D0aD0bD0cD0dD0eD0fD13D14D15D16D17D18D19D1aD1bD1cD1dD1eD1fD23D24D25D26D27D28D29D2aD2bD2cD2dD2eD2fD33D34D35D36D37D38D39D3aD3bD3cD3dD3eD3fD43D44D45D46D47D48D49D4aD4bD4cD4dD4eD4fD53D54D55D56D57D58D59D5aD5bD5cD5dD5eD5fD63D64D65D66D67D68D69D6aD6bD6cD6dD6eD6fD73D74D75D76D77D78D79D7aD7bD7cD7dD7eD7fD83D84D85D86D87D88D89D8aD8bD8cD8dD8eD8fD93D96D99D9cD9fDa3Da6Da9DacDafDb3Db6Db9DbcDbfDc3Dc6Dc9DccDcfDd3Dd6Dd9DdcDdfDe3De6De9DecDefDf3Df6Df9DfcDffCbbbD94D95D97D98D9aD9bD9dD9eDa4Da5Da7Da8DaaDabDadDaeDb4Db5Db7Db8DbaDbbDbdDbeDc4Dc5Dc7Dc8DcaDcbDcdDceDd4Dd5Dd7Dd8DdaDdbDddDdeDe4De5De7De8DeaDebDedDeeDf4Df5Df7Df8DfaDfbDfdDfeCf00Dd0Dd1Dd2De0De1De2Df0Df1Df2"{
	

	roiManager("show all with labels");
	roiManager("save", file-path);
	
}