// Batch Save Avg IPs in a directory from Matlab / Miji 

stk = getTitle();
par = getInfo("image.directory");
svdir = par+"AvgIP\\"; 

run("Z Project...", "stop=40 projection=[Average Intensity]");
run("Enhance Contrast", "saturated=0.35");

avgip = getTitle(); 
saveAs("Tiff", svdir+avgip);
close("*");