// Total dF/F Normalization stk = getTitle(); stkne = File.getNameWithoutExtension(stk) run("Z Project...", "projection=[Average Intensity]"); mean = getTitle(); // Calculate difference imageCalculator("Subtract create 32-bit stack", stk, mean); diff = getTitle(); // Normalize imageCalculator("Divide create 32-bit stack", diff, mean); rename(stk+"_dff"); setMinAndMax(-1, 1); close(diff); close(mean);