// OHSU Slice Imaging Overarching process. 

// ==================================================
// Written by Wilson Adams | Siciliano Lab | Feb 2022
// ==================================================

// For each animal, we have a series of experiments to explore results from. Many of them are repeated stimulations on the same field of view. 

// To get longitudinal information about cells across multiple stim conditions, we need a way to track cells between imaging experiments to compare their responses as a function of stim time and amplitude. 

// For a series of ten experiments, we want to isolate and align the images of all 10 experiments. 

// Initially, we will need to segment our base stack to register all of our images against. To combat issues with photobleaching and whatnot, I am going to use the first imaging experiment in each group as the base image stack to register against (brightest baseline signal, least photobleaching). 

// Processing base stack
// 		1) Import base stack (virtual)
// 		2) Obtain A