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S

saveParameters() - Method in class Option
saveParameters Stores the parameters in a file as a serialized object
Segment - Class in <Unnamed>
Segment A Segment is a line that connects two Point the start and the end points A Segment can be connected to another segment in which the end of one is the start of the other A connected Segment is never closed A closed Segment is deleted
Segment(Point) - Constructor for class Segment
Segment Create a Segment with @param p as the start Point
segmentsToPoints() - Method in class OtoProfile
segmentsToPoints Convert segments to points
setBaseLevel(double) - Method in class Option
setBaseLevel
setBlue(boolean) - Method in class Canal
setBlue Use B channel
setCanal(int, double) - Method in class Pixel
setCanal Set channel @param canal with @param intt value
setDepthMin(double) - Method in class Option
setDepthMin
setDrawOriginal(boolean) - Method in class Option
setDrawOriginal
setElevationMin(double) - Method in class Option
setElevationMin
setEnd(Point) - Method in class Segment
setEnd Set segment's end as @param p Point
setFilter(Filter) - Method in class OtoProfile
setFilter Set filter
setGranularity(double) - Method in class Option
setGranularity
setGreen(boolean) - Method in class Canal
setGreen Use G channel
setHLline(boolean) - Method in class Option
setHLline
setMarkColorH(int) - Method in class Option
setMarkColorH
setMarkColorL(int) - Method in class Option
setMarkColorL
setMarkDraw(boolean) - Method in class Option
setMarkDraw
setMarkSizeX(int) - Method in class Option
setMarkSizeX
setMarkSizeY(int) - Method in class Option
setMarkSizeY
setMarkType(int) - Method in class Option
setMarkType
setNumFilterPoints(int) - Method in class Option
setNumFilterPoints
setPlateau(boolean) - Method in class Option
setPlateau
setRed(boolean) - Method in class Canal
setRed Use R channel
setSegments(ArrayList<Segment>) - Method in class OtoProfile
setSegments Set segment list to @param an
setup(String, ImagePlus) - Method in class OtoRing_
 
setYYY(boolean) - Method in class Canal
setYYY Use Y channel
smoothSegments(double, int) - Method in class OtoProfile
smoothSegments Remove segments with heights in channel @param ch below @param grain.
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