// Single HDSTORM to ThunderSTORM script by Christophe Leterrier
// Translate single-channel txt localization files from HDSTORM.cvs to ThunderSTORM .csv localization files
// Calls F-HDcsvTranslate.js

importClass(Packages.ij.io.OpenDialog)
importClass(Packages.java.io.File)
importClass(Packages.ij.IJ);
importClass(Packages.ij.gui.GenericDialog);

// Default options
pxSize_def = 160;

var od = new OpenDialog("Choose an HDSTORM txt file", "");
var directory = od.getDirectory();
var name = od.getFileName();
var path = directory + name;
IJ.log("\nTranlator input file path:" + path);

// Options
var gd = new GenericDialog("Translator Options");
gd.addNumericField("Camera pixel size", pxSize_def, 0, 4, "nm");
gd.showDialog();
var pxSize = gd.getNextNumber();

if (gd.wasOKed()) {
	var plugDir = IJ.getDirectory("plugins"); 
	plugDir = plugDir + "added macros" + File.separator + "ChriSTORM extras" + File.separator;
	var translateJS = "F-HDcvsTranslate.js";
	var translatePath = plugDir + translateJS;
	IJ.log("Translator path:" + plugDir + translateJS);
	load(translatePath);
	
	HDcvsTranslate(path, directory, "TS", pxSize);
	IJ.log("Single HD to TS end");
}