// Single-Add_Z_uncertainty.js script by Christophe Leterrier
// Calls F-TSAddZUnc.js to add/replace Z uncertainty in a ThunderSTORM file
// 14-10-28

importClass(Packages.ij.io.OpenDialog)
importClass(Packages.java.io.File)
importClass(Packages.ij.IJ);
importClass(Packages.ij.gui.GenericDialog);

factor_def = 2;

var od = new OpenDialog("Choose a Thunderstorm txt file", "");
var directory = od.getDirectory();
var name = od.getFileName();
var path = directory + name;
IJ.log("\nAdd Z Uncertainty input file path:" + path);

var gd = new GenericDialog("Add Z uncertainty: options");
gd.addNumericField("Z uncertainty factor", factor_def, 1, 3, "* XY uncertainty");
gd.showDialog();
var factor = gd.getNextNumber();

if (gd.wasOKed()) {
	var plugDir = IJ.getDirectory("plugins"); 
	plugDir = plugDir + "added macros" + File.separator + "ChriSTORM extras" + File.separator;
	var AddZUncJS = "F-TSAddZUnc.js";
	var AddZUncPath = plugDir + AddZUncJS;
	IJ.log("Add Z Uncertainty path:" + plugDir + AddZUncJS);
	load(AddZUncPath);
	
	TSAddZUnc(path, directory, factor);
	IJ.log("Add Z uncertainty end");
}