// Action Bar description file : NAME_HERE
run("Action Bar","/plugins/ActionBar/Convert3ChannelOJto5Channel.txt");
exit();

<line>
<text>Convert OJ from 3 to 5 channel images

<button>
label=Convert OJ from 3 to 5 channel images
icon=noicon
arg=<macro>
	imnum=1;
	totalimages=ojNImages();
	first=ojFirstObject(imnum);
	next=ojFirstObject(imnum+1);
	idlast=-1;

	//the below fills out the column headers
	if (nResults>=0) run("Clear Results");     // Check whether the results table is empty, if not clear it.
		i = nResults;    // variable for counting, initialising with 0
		setResult("Marker", 0, 0);
		setResult("Imageid", 0,0 );
		setResult("X", 0, 0);
		setResult("Y", 0, 0);
		setResult("Z", 0, 0);
		setResult("Notes",0,",");
		setResult("OrigType",0,",");
			
		markers = newArray(ojNColumns());
		index=0;
		for (i=1;i<=ojNColumns();i++){
			if(endsWith(ojGetColumnTitle(i),"xpos")){
				markers[index]=substring(ojGetColumnTitle(i), 0, indexOf(ojGetColumnTitle(i), "_"));//find the name before the _
				index++;
			}
		}
		markers=Array.trim(markers,index);

	
		for (i=0; i<lengthOf(markers);i++){
			setResult(markers[i],0,0 );	
		}

	for (n=1; n<=ojNObjects(); n++) {

		if (n==next){
			imnum++;
			next=ojFirstObject(imnum+1);
		}


		setResult("Marker", n-1, n);
		setResult("Imageid", n-1, imnum );
		
		ojShowObject(n);
   
		X=ojXPos(1);
		Y=ojYPos(1);
		Z=ojZPos(1);
		frame=(floor((Z-1)/3));
		setResult("X", n-1, X);
		setResult("Y", n-1, Y);
		setResult("Z", n-1, frame*5+1);
		setResult(ojSelectedItemName(), n-1,1 );
		setResult("Notes",n-1,ojResultString(Notes,n));
		setResult("OrigType",n-1,ojResultString(OrigType,n));
   }
   updateResults();
selectWindow("Results"); 
saveAs("results");
</macro>




<button>
label=Load and apply objects from temp file. Images must be in same order. 
icon=noicon
arg=<macro>
	open();
	updateResults();
	idlast=0;

	maxImageID=1;
	
	markers = newArray(ojNColumns());
	index=0;
	for (i=1;i<=ojNColumns();i++){
		if(endsWith(ojGetColumnTitle(i),"xpos")){
			markers[index]=substring(ojGetColumnTitle(i), 0, indexOf(ojGetColumnTitle(i), "_"));//find the name before the _
			index++;
		}
	}
	markers=Array.trim(markers,index);

	idlast=getResult("Imageid", 0);
	ojShowImage(idlast);
	for (n=0; n<nResults; n++){
		
		id=getResult("Imageid", n);
		
		if(id!=idlast){
			ojShowImage(id);
			idlast=id;
		}
		
		setSlice(getResult("Z", n));
	
		for (i=0; i<lengthOf(markers);i++){
			if (getResult(markers[i],n)==1){
				name=markers[i];
			};	
		}
			
		ojSwitchToItem(name);
		ojSetMarker(getResult("X", n), getResult("Y", n));			
		ojSetResult("Notes",n+1,getResult("Notes",n));
		ojSetResult("OrigType",getResult("OrigType",n));
	}
	selectWindow("Results"); 
    run("Close"); 
</macro>

</line>