// Shortcut to get full image metadata using Bio-Formats plugin
// Written by Zhou XU
// at Monash Centre for Electron Microscopy


// Copyright 2022 Zhou Xu
/* This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, If not, see <http://www.gnu.org/licenses/>. */

// Pre-requisition of Bio-Formats library to import the chosen file's basic metadata to set the calibration.


path = getDirectory("image");
if (path=="") exit ("path not available");
name = getInfo("image.filename");
if (name=="") exit ("name not available");
id = path + name;

run("Bio-Formats Importer", "open=[id] autoscale color_mode=Default display_metadata rois_import=[ROI manager] view=[Metadata only] stack_order=Default");