//Note these macros are old and may require updating for the new version of DeconvolutionLab

macro GeneratePSF
{
	Dialog.create("Enter Acquisition Parameters");
		Dialog.addNumber("Emission Wavelength: ",545);
		Dialog.addNumber("Refractive Index of Immersion (Water = 1.33, Oil = 1.515): ",1.515);
		Dialog.addNumber("NA of Objective: ",1.4);
	Dialog.show();
	
	wavelength = Dialog.getNumber();
	RI = Dialog.getNumber();
	NA = Dialog.getNumber();
	/*
	if ((NA == 1.4) && (RI <= (NA-0.04)))
	{
		newNA = (RI/1.515)*NA;
		NA = newNA;
		Dialog.create("Warning");
		Dialog.addMessage("There is refractive index mismatch. NA has been corrected to " + NA + " to compensate.");
		Dialog.show();
	}
	*/
	
	getPixelSize(unit,pX,pY,pZ);
	
	LateralRes = pX*1000;
	AxialRes = pZ*1000;
	ImageWidth = getWidth();
	ImageHeight = getHeight();
	ZSize = nSlices;
	
	pref = "plugins/PSFGenerator.txt";
	
	info = "psf-BW-NI=" + RI +  "\nLambda=" + wavelength + "\nResLateral=" + LateralRes + "\nResAxial=" + AxialRes +
	"\nLUT=Grays" + "\nNZ=" + ZSize + "\nNY=" + ImageHeight + "\nNX=" + ImageWidth + "\nType=32-bits\nNA="+NA+"\npsf-BW-accuracy=Better";
	info=split(info,"\n");
	file = File.open(pref);
	for (i=0;i<info.length;i++)
		print(file,info[i]);
	File.close(file);
	
	//psf = call("PSFGenerator.gui");
	//psf=call("PSFGenerator.get");
	
	run("PSF Generator");
	
	//psf= call("PSFGenerator.computeImagePlus","config.txt");
	//psf= call("PSFGenerator.computeImagePlus","D:/Ahsen/Desktop/Fiji.app/plugins/config.txt");
}